Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clostripain | DW048_07165 | Not Available | Negative | 1612398 - 1613660 | 46755.4 |
| hypothetical protein | DW048_07170 | Not Available | Negative | 1613671 - 1614066 | 15199.7 |
| duf417 domain-containing protein | DW048_07185 | Not Available | Negative | 1617232 - 1617822 | 21267.4 |
| helix-turn-helix domain-containing protein | DW048_07190 | Not Available | Negative | 1617915 - 1618751 | 32737.6 |
| hypothetical protein | DW048_07200 | Not Available | Negative | 1622687 - 1624027 | 49757.6 |
| glycoside hydrolase family 28 protein | DW048_07205 | Not Available | Negative | 1624036 - 1625367 | 49440.7 |
| hydrolase | DW048_07210 | Not Available | Negative | 1625434 - 1628190 | 104359.0 |
| hypothetical protein | DW048_07220 | Not Available | Positive | 1631587 - 1631796 | 8349.72 |
| n-acetylneuraminate lyase | DW048_07235 | Not Available | Positive | 1635740 - 1636654 | 33926.9 |
| n-acylglucosamine 2-epimerase | DW048_07240 | Not Available | Positive | 1636667 - 1637863 | 46187.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

