Phocaeicola vulgatus strain AF41-8MH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF41-8MH is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolic requirements and mesophilic temperature range. This strain is non-motile, existing primarily as single cells rather than in clusters or chains. It possesses flagella, which may play a role in its life cycle or interaction with the environment, despite its lack of mobility. As a member of the host-associated microbiota, P. vulgatus strain AF41-8MH is free-living but is notably associated with Homo sapiens, indicating its potential role in the human microbiome. Its biotic relationship suggests that it may contribute to the complex ecosystem of microbes that inhabit human hosts, possibly influencing health and disease processes. The strain contains one replicon and features a unique two-membrane structure, typical of Gram-positive bacteria, which may affect its interaction with host tissues and its ability to thrive in anaerobic environments. The accession number for this strain is QRNW00000000.1, providing a reference for further genetic and functional studies. Understanding the traits of Phocaeicola vulgatus strain AF41-8MH can offer insights into its ecological role in the human gut microbiome and its potential implications for human health. Its anaerobic nature and presence in human hosts suggest that it may participate in metabolic processes that are essential for maintaining gut health, further emphasizing the importance of studying gut-associated microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF41-8MH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF41-8MH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysine exporter lyso family proteinDW048_06840Not AvailableNegative1543382 - 154400222075.5
duf340 domain-containing proteinDW048_06845Not AvailableNegative1543992 - 154427910298.2
antibiotic biosynthesis monooxygenaseDW048_06850Not AvailableNegative1544836 - 154511110430.6
glycosyltransferaseDW048_06855Not AvailableNegative1545160 - 154631744792.2
hypothetical proteinDW048_06860Not AvailablePositive1546522 - 154702819772.7
diaminopimelate decarboxylaseDW048_06865Not AvailableNegative1547092 - 154825242749.4
atp-binding cassette domain-containing proteinDW048_06875Not AvailableNegative1549786 - 155054128405.2
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieDW048_06880Not AvailableNegative1550546 - 155115723137.6
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseDW048_06890Not AvailableNegative1552086 - 155280526636.3
imidazole glycerol phosphate synthase subunit hishDW048_06895Not AvailableNegative1552847 - 155343722284.8

Displaying genes 1131 – 1140 of 3755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.