Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysine exporter lyso family protein | DW048_06840 | Not Available | Negative | 1543382 - 1544002 | 22075.5 |
| duf340 domain-containing protein | DW048_06845 | Not Available | Negative | 1543992 - 1544279 | 10298.2 |
| antibiotic biosynthesis monooxygenase | DW048_06850 | Not Available | Negative | 1544836 - 1545111 | 10430.6 |
| glycosyltransferase | DW048_06855 | Not Available | Negative | 1545160 - 1546317 | 44792.2 |
| hypothetical protein | DW048_06860 | Not Available | Positive | 1546522 - 1547028 | 19772.7 |
| diaminopimelate decarboxylase | DW048_06865 | Not Available | Negative | 1547092 - 1548252 | 42749.4 |
| atp-binding cassette domain-containing protein | DW048_06875 | Not Available | Negative | 1549786 - 1550541 | 28405.2 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DW048_06880 | Not Available | Negative | 1550546 - 1551157 | 23137.6 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DW048_06890 | Not Available | Negative | 1552086 - 1552805 | 26636.3 |
| imidazole glycerol phosphate synthase subunit hish | DW048_06895 | Not Available | Negative | 1552847 - 1553437 | 22284.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

