Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DW048_06470 | Not Available | Positive | 1458709 - 1460718 | 77306.4 |
| threonine--trna ligase | DW048_06475 | Not Available | Positive | 1460799 - 1462739 | 74203.1 |
| translation initiation factor if-3 | DW048_06480 | Not Available | Positive | 1462855 - 1463451 | 22643.4 |
| 50s ribosomal protein l35 | DW048_06485 | Not Available | Positive | 1463523 - 1463720 | 7367.31 |
| 50s ribosomal protein l20 | DW048_06490 | Not Available | Positive | 1463832 - 1464182 | 13181.3 |
| endolytic transglycosylase mltg | DW048_06500 | Not Available | Negative | 1465462 - 1466496 | 39588.9 |
| hypothetical protein | DW048_06505 | Not Available | Negative | 1466498 - 1466683 | 7166.81 |
| alpha-n-arabinofuranosidase | DW048_06510 | Not Available | Positive | 1466697 - 1468220 | 57343.5 |
| alpha-l-fucosidase | DW048_06520 | Not Available | Positive | 1469291 - 1470640 | 51875.6 |
| fad-dependent oxidoreductase | DW048_06535 | Not Available | Positive | 1473734 - 1474981 | 48932.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

