Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase s41 | DW048_06415 | Not Available | Negative | 1447882 - 1451142 | 122993.0 |
| hypothetical protein | DW048_06420 | Not Available | Negative | 1451172 - 1451438 | 10058.5 |
| phage holin family protein | DW048_06425 | Not Available | Negative | 1451441 - 1451797 | 13343.2 |
| ytxh domain-containing protein | DW048_06430 | Not Available | Negative | 1451875 - 1452072 | 6773.24 |
| glycoside hydrolase xylanase | DW048_06440 | Not Available | Positive | 1452905 - 1453864 | 35488.6 |
| ompa family protein | DW048_06445 | Not Available | Negative | 1454197 - 1455291 | 39293.2 |
| duf3869 domain-containing protein | DW048_06450 | Not Available | Negative | 1455335 - 1456183 | 30466.4 |
| hypothetical protein | DW048_06455 | Not Available | Negative | 1456194 - 1457432 | 47660.4 |
| holliday junction resolvase ruvx | DW048_06460 | Not Available | Positive | 1457639 - 1458058 | 15859.5 |
| peptide deformylase | DW048_06465 | Not Available | Positive | 1458082 - 1458636 | 21036.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

