Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribulose-phosphate 3-epimerase | DW048_06295 | Not Available | Positive | 1413856 - 1414509 | 23913.3 |
| comec family competence protein | DW048_06300 | Not Available | Positive | 1414556 - 1416475 | 72666.6 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DW048_06305 | Not Available | Positive | 1416525 - 1417565 | 39376.4 |
| duf4827 domain-containing protein | DW048_06310 | Not Available | Positive | 1417648 - 1418283 | 24123.5 |
| phosphoglucosamine mutase | DW048_06315 | Not Available | Positive | 1418280 - 1419668 | 50475.7 |
| glycoside hydrolase family 16 protein | DW048_06320 | Not Available | Positive | 1419759 - 1420550 | 30551.4 |
| mfs transporter | DW048_06325 | Not Available | Positive | 1420852 - 1422345 | 54449.7 |
| is110 family transposase | DW048_06330 | Not Available | Negative | 1422516 - 1423481 | 35628.5 |
| endo-1,4-beta-xylanase | DW048_06335 | Not Available | Positive | 1423694 - 1424815 | 42056.4 |
| alpha-n-arabinofuranosidase | DW048_06340 | Not Available | Positive | 1424828 - 1425799 | 36792.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

