Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | + | 145154 - 146810 | Not Available |
| helix-turn-helix domain-containing protein | DW150_00410 | Not Available | - | 142602 - 145388 | 106038.0 |
| glycoside hydrolase | DW150_00415 | Not Available | - | 145542 - 147752 | 83849.4 |
| hypothetical protein | DW150_00420 | Not Available | - | 148143 - 151115 | 113338.0 |
| galactosylceramidase | DW150_00425 | Not Available | - | 151132 - 153237 | 78274.5 |
| glycoside hydrolase family 43 protein | DW150_00430 | Not Available | - | 153234 - 154841 | 60599.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00435 | Not Available | - | 155083 - 156696 | 61874.0 |
| susc/raga family tonb-linked outer membrane protein | DW150_00440 | Not Available | - | 156751 - 160275 | 129919.0 |
| duf4974 domain-containing protein | DW150_00445 | Not Available | - | 160430 - 161374 | 35960.5 |
| rna polymerase sigma-70 factor | DW150_00450 | Not Available | - | 161493 - 162080 | 22864.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
