Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_04515 | Not Available | - | 1108949 - 1110871 | 73418.4 |
| hypothetical protein | DW150_04520 | Not Available | - | 1110876 - 1112381 | 57370.8 |
| 6-phosphofructokinase | DW150_04525 | Not Available | + | 1112529 - 1113539 | 35787.3 |
| sulfatase | DW150_04530 | Not Available | + | 1113640 - 1115193 | 57914.7 |
| ribonuclease iii | DW150_04535 | Not Available | - | 1115335 - 1116261 | 35179.1 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DW150_04540 | Not Available | - | 1116264 - 1117529 | 44849.9 |
| acyl carrier protein | DW150_04545 | Not Available | - | 1117548 - 1117784 | 8382.75 |
| phosphoribosylglycinamide formyltransferase | DW150_04550 | Not Available | + | 1117937 - 1118515 | 21430.2 |
| rna polymerase sigma-70 factor | DW150_04555 | Not Available | - | 1118487 - 1119032 | 21382.9 |
| susc/raga family tonb-linked outer membrane protein | DW150_04560 | Not Available | + | 1119353 - 1122394 | 112161.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
