Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4221 domain-containing protein | DW150_04465 | Not Available | + | 1093083 - 1094267 | 46434.6 |
| duf2062 domain-containing protein | DW150_04470 | Not Available | + | 1094389 - 1095582 | 44770.9 |
| methyltransferase domain-containing protein | DW150_04475 | Not Available | + | 1095575 - 1099429 | 146266.0 |
| nad(p)/fad-dependent oxidoreductase | DW150_04480 | Not Available | + | 1099422 - 1100912 | 56646.9 |
| choloylglycine hydrolase | DW150_04485 | Not Available | + | 1100905 - 1102569 | 63331.6 |
| phenylacetate--coa ligase family protein | DW150_04490 | Not Available | + | 1102571 - 1103866 | 49500.5 |
| hypothetical protein | DW150_04495 | Not Available | + | 1103917 - 1104492 | 21440.0 |
| pas domain-containing protein | DW150_04500 | Not Available | - | 1104610 - 1107033 | 92925.7 |
| hypothetical protein | DW150_04505 | Not Available | + | 1107233 - 1108054 | 30690.0 |
| duf3108 domain-containing protein | DW150_04510 | Not Available | - | 1108143 - 1108952 | 31328.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
