Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uracil phosphoribosyltransferase | DW150_04205 | Not Available | + | 1025875 - 1026534 | 24410.4 |
| 2-oxoacid:ferredoxin oxidoreductase subunit beta | DW150_04210 | Not Available | - | 1026692 - 1027696 | 36538.8 |
| 2-oxoacid:acceptor oxidoreductase subunit alpha | DW150_04215 | Not Available | - | 1027720 - 1029567 | 66276.6 |
| Trna-arg | Not Available | Not Available | + | 1029978 - 1030052 | Not Available |
| glycine c-acetyltransferase | DW150_04225 | Not Available | - | 1030121 - 1031311 | 43570.4 |
| nad-dependent epimerase/dehydratase family protein | DW150_04230 | Not Available | + | 1031482 - 1032435 | 35313.3 |
| sugar kinase | DW150_04235 | Not Available | + | 1032579 - 1033643 | 38964.5 |
| protein translocase subunit secdf | DW150_04240 | Not Available | - | 1033912 - 1036899 | 109204.0 |
| m3 family peptidase | DW150_04245 | Not Available | - | 1037078 - 1039165 | 78919.4 |
| endonuclease | DW150_04250 | Not Available | - | 1039192 - 1040271 | 40331.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
