Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii 3-dehydroquinate dehydratase | DW150_04005 | Not Available | - | 976687 - 977109 | 15700.0 |
| site-specific tyrosine recombinase xerd | DW150_04010 | Not Available | + | 977176 - 978102 | 35573.5 |
| tetratricopeptide repeat protein | DW150_04015 | Not Available | + | 978261 - 979937 | 60891.9 |
| duf4369 domain-containing protein | DW150_04020 | Not Available | + | 980090 - 981157 | 40445.1 |
| atp-binding protein | DW150_04025 | Not Available | + | 981162 - 982700 | 56227.8 |
| hypothetical protein | DW150_04030 | Not Available | - | 982923 - 983408 | 18279.6 |
| hypothetical protein | DW150_04035 | Not Available | - | 983428 - 983886 | 16786.8 |
| radical sam protein | DW150_04040 | Not Available | - | 983901 - 984983 | 41758.2 |
| hypothetical protein | DW150_04045 | Not Available | + | 984897 - 985085 | 7467.09 |
| methionine--trna ligase | DW150_04050 | Not Available | + | 985215 - 987257 | 77893.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
