Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| isoprenyl transferase | DW150_03955 | Not Available | + | 966136 - 966867 | 28104.5 |
| outer membrane protein assembly factor bama | DW150_03960 | Not Available | + | 966879 - 969518 | 100661.0 |
| omph family outer membrane protein | DW150_03965 | Not Available | + | 969539 - 970054 | 18967.6 |
| omph family outer membrane protein | DW150_03970 | Not Available | + | 970112 - 970615 | 19260.2 |
| glutamate racemase | DW150_03975 | Not Available | + | 970718 - 971563 | 31428.0 |
| pyridoxamine kinase | DW150_03980 | Not Available | + | 971620 - 972492 | 32885.6 |
| abc transporter permease | DW150_03985 | Not Available | - | 972880 - 974118 | 45796.0 |
| 30s ribosome-binding factor rbfa | DW150_03990 | Not Available | - | 974128 - 974463 | 12972.9 |
| methyltransferase | DW150_03995 | Not Available | - | 974537 - 975175 | 24413.6 |
| pyruvate kinase | DW150_04000 | Not Available | - | 975191 - 976654 | 54241.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
