Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phospholipase | DW150_03795 | Not Available | + | 929163 - 929948 | 29347.5 |
| alpha-amylase | DW150_03800 | Not Available | + | 929966 - 931663 | 64797.8 |
| hpaii family restriction endonuclease | DW150_03805 | Not Available | - | 931793 - 932881 | 41342.9 |
| hypothetical protein | DW150_03810 | Not Available | + | 932984 - 933223 | 9476.92 |
| linear amide c-n hydrolase | DW150_03815 | Not Available | + | 933370 - 934428 | 39433.4 |
| hypothetical protein | DW150_03820 | Not Available | + | 934663 - 935121 | 17636.3 |
| hsp20/alpha crystallin family protein | DW150_03825 | Not Available | + | 935387 - 935830 | 16973.1 |
| response regulator | DW150_03830 | Not Available | - | 936071 - 938416 | 89679.6 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DW150_03835 | Not Available | - | 938586 - 941813 | 119736.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DW150_03840 | Not Available | - | 941837 - 942913 | 39980.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
