Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter substrate-binding protein psts family protein | DW150_03545 | Not Available | + | 873325 - 874143 | 29966.5 |
| glutamine--trna ligase/yqey domain fusion protein | DW150_03550 | Not Available | + | 874201 - 875940 | 66852.9 |
| multidrug transporter | DW150_03555 | Not Available | + | 875951 - 877468 | 59264.2 |
| deda family protein | DW150_03560 | Not Available | + | 877476 - 878102 | 22987.3 |
| thiol peroxidase | DW150_03565 | Not Available | + | 878171 - 878674 | 17946.7 |
| gdp-l-fucose synthase | DW150_03570 | Not Available | - | 878869 - 879945 | 40523.7 |
| gdp-mannose 4,6-dehydratase | DW150_03575 | Not Available | - | 879945 - 881027 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DW150_03580 | Not Available | - | 881203 - 882267 | 40506.4 |
| undecaprenyl-phosphate glucose phosphotransferase | DW150_03585 | Not Available | + | 882381 - 883784 | 54078.9 |
| glucose-1-phosphate thymidylyltransferase | DW150_03590 | Not Available | + | 883820 - 884707 | 32737.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
