Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| na+/h+ antiporter nhaa | DW150_03330 | Not Available | - | 833006 - 834346 | 48711.7 |
| elongation factor 4 | DW150_03335 | Not Available | - | 834479 - 836260 | 66361.4 |
| antitoxin hicb | DW150_03340 | Not Available | - | 836344 - 836736 | 14724.7 |
| type ii toxin-antitoxin system hica family toxin | DW150_03345 | Not Available | - | 836776 - 836964 | 6962.6 |
| hypothetical protein | DW150_03350 | Not Available | - | 837119 - 837322 | 7403.12 |
| c_gcaxxg_c_c family protein | DW150_03355 | Not Available | - | 837479 - 837982 | 18646.3 |
| d-2-hydroxyacid dehydrogenase | DW150_03360 | Not Available | - | 838026 - 838982 | 34416.8 |
| replication-associated recombination protein a | DW150_03365 | Not Available | - | 839009 - 840286 | 47220.9 |
| hypothetical protein | DW150_03370 | Not Available | + | 840526 - 842601 | 78233.5 |
| quinoprotein amine dehydrogenase | DW150_03375 | Not Available | + | 842633 - 843709 | 39490.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
