Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| threonine ammonia-lyase | DW150_03280 | Not Available | - | 817772 - 818968 | 42352.4 |
| dmt family transporter | DW150_03285 | Not Available | - | 819165 - 820079 | 33436.3 |
| mfs transporter | DW150_03290 | Not Available | - | 820111 - 821301 | 43348.9 |
| glutamate decarboxylase | DW150_03295 | Not Available | + | 821559 - 823007 | 54670.7 |
| glutaminase | DW150_03300 | Not Available | + | 823073 - 824035 | 34758.9 |
| copper homeostasis protein cutc | DW150_03305 | Not Available | + | 824337 - 825200 | 31400.6 |
| transglutaminase domain-containing protein | DW150_03310 | Not Available | - | 825290 - 827953 | 99178.9 |
| two pore domain potassium channel family protein | DW150_03315 | Not Available | - | 828035 - 828769 | 28208.9 |
| amino acid permease | DW150_03320 | Not Available | + | 828935 - 830512 | 56520.8 |
| sensor histidine kinase | DW150_03325 | Not Available | + | 830730 - 833003 | 87596.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
