Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| antibiotic biosynthesis monooxygenase | DW150_03125 | Not Available | + | 783389 - 783664 | 10430.6 |
| duf340 domain-containing protein | DW150_03130 | Not Available | + | 784221 - 784508 | 10298.2 |
| lysine exporter lyso family protein | DW150_03135 | Not Available | + | 784498 - 785118 | 22075.5 |
| abc transporter permease | DW150_03140 | Not Available | - | 785465 - 786709 | 46849.5 |
| pyridoxal phosphate-dependent aminotransferase | DW150_03145 | Not Available | - | 786711 - 787913 | 44969.1 |
| fucose isomerase | DW150_03150 | Not Available | + | 788079 - 789314 | 46174.3 |
| duf4494 domain-containing protein | DW150_03155 | Not Available | + | 789410 - 789892 | 18209.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DW150_03160 | Not Available | + | 789926 - 790594 | 25385.4 |
| dihydroorotate dehydrogenase-like protein | DW150_03165 | Not Available | + | 790608 - 791582 | 35520.3 |
| long-chain fatty acid--coa ligase | DW150_03170 | Not Available | + | 791772 - 793430 | 62504.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
