Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| formyltetrahydrofolate deformylase | DW150_03075 | Not Available | + | 774203 - 775060 | 33273.6 |
| imidazole glycerol phosphate synthase subunit hish | DW150_03080 | Not Available | + | 775060 - 775650 | 22269.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DW150_03085 | Not Available | + | 775692 - 776411 | 26608.3 |
| imidazole glycerol phosphate synthase subunit hisf | DW150_03090 | Not Available | + | 776421 - 777176 | 27233.5 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DW150_03095 | Not Available | + | 777341 - 777952 | 23137.6 |
| atp-binding cassette domain-containing protein | DW150_03100 | Not Available | + | 777957 - 778712 | 28375.1 |
| aspartate kinase | DW150_03105 | Not Available | + | 778820 - 780139 | 49296.1 |
| diaminopimelate decarboxylase | DW150_03110 | Not Available | + | 780247 - 781407 | 42749.4 |
| hypothetical protein | DW150_03115 | Not Available | - | 781472 - 781978 | 19772.7 |
| glycosyltransferase | DW150_03120 | Not Available | + | 782183 - 783340 | 44854.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
