Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycyl-radical enzyme activating protein | DW150_02805 | Not Available | - | 727100 - 728008 | 33483.9 |
| glycyl radical protein | DW150_02810 | Not Available | - | 728013 - 730439 | 92098.8 |
| nucleoside kinase | DW150_02815 | Not Available | - | 730741 - 732414 | 64762.8 |
| na/pi cotransporter family protein | DW150_02820 | Not Available | + | 732496 - 734187 | 62845.7 |
| na/pi cotransporter family protein | DW150_02825 | Not Available | + | 734332 - 736023 | 63273.4 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW150_02830 | Not Available | - | 736101 - 736967 | 31386.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW150_02835 | Not Available | - | 736989 - 737573 | 21446.7 |
| nad-dependent deacylase | DW150_02840 | Not Available | + | 737701 - 738399 | 25662.7 |
| rubredoxin | DW150_02845 | Not Available | + | 738474 - 738638 | 5868.75 |
| polyribonucleotide nucleotidyltransferase | DW150_02850 | Not Available | - | 738822 - 740957 | 78631.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
