Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | DW150_02280 | Not Available | + | 594887 - 595414 | 20439.6 |
| biosynthetic arginine decarboxylase | DW150_02285 | Not Available | + | 595456 - 597348 | 71492.0 |
| acetylglutamate kinase | DW150_02290 | Not Available | + | 597353 - 598126 | 27207.2 |
| rna polymerase sigma factor | DW150_02295 | Not Available | + | 598190 - 598699 | 20171.2 |
| hypothetical protein | DW150_02300 | Not Available | + | 598689 - 599168 | 18339.8 |
| duf2807 domain-containing protein | DW150_02305 | Not Available | - | 599366 - 600097 | 25863.4 |
| m48 family peptidase | DW150_02310 | Not Available | + | 600204 - 600908 | 27278.5 |
| acetylxylan esterase | DW150_02315 | Not Available | + | 600929 - 602239 | 49208.1 |
| hypothetical protein | DW150_02320 | Not Available | + | 602344 - 602994 | 24725.6 |
| hypothetical protein | DW150_02325 | Not Available | + | 603252 - 603455 | 7994.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
