Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-glucan family phosphorylase | DW150_21720 | Not Available | + | 5174713 - 5177277 | 98206.9 |
| low specificity l-threonine aldolase | DW150_21725 | Not Available | - | 5177543 - 5178559 | 37832.5 |
| tonb-dependent receptor | DW150_21730 | Not Available | + | 5178725 - 5181490 | 104335.0 |
| hypothetical protein | DW150_21735 | Not Available | + | 5181531 - 5183108 | 56690.7 |
| mannose-6-phosphate isomerase | DW150_21740 | Not Available | + | 5183222 - 5184193 | 36186.5 |
| lactonase family protein | DW150_21745 | Not Available | - | 5184284 - 5185450 | 42728.9 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | + | 5185591 - 5185985 | Not Available |
| rpn family recombination-promoting nuclease/putative transposase | DW150_21755 | Not Available | - | 5186233 - 5187111 | 33857.3 |
| atp-binding protein | DW150_21760 | Not Available | + | 5187457 - 5188779 | 51497.4 |
| hypothetical protein | DW150_21770 | Not Available | + | 5190177 - 5191790 | 60932.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
