Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n-acetyltransferase | DW150_21620 | Not Available | - | 5150405 - 5150932 | 20831.8 |
| non-canonical purine ntp diphosphatase | DW150_21625 | Not Available | + | 5151092 - 5151673 | 21370.8 |
| l-rhamnose mutarotase | DW150_21630 | Not Available | - | 5151876 - 5152259 | 15479.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_21635 | Not Available | - | 5152282 - 5153970 | 63945.9 |
| tonb-dependent receptor | DW150_21640 | Not Available | - | 5153996 - 5157067 | 113438.0 |
| alpha-l-fucosidase | DW150_21645 | Not Available | - | 5157158 - 5158804 | 62681.8 |
| arac family transcriptional regulator | DW150_21650 | Not Available | + | 5159046 - 5159906 | 33567.5 |
| aldo/keto reductase | DW150_21655 | Not Available | + | 5160024 - 5160956 | 34845.4 |
| amidohydrolase | DW150_21660 | Not Available | + | 5160974 - 5161897 | 35462.0 |
| l-fucose:h+ symporter permease | DW150_21665 | Not Available | + | 5161924 - 5163183 | 47291.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
