Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 88 | DW150_02080 | Not Available | + | 548453 - 549751 | 49874.6 |
| hypothetical protein | DW150_02085 | Not Available | - | 549808 - 550305 | 18622.8 |
| hypothetical protein | DW150_02090 | Not Available | - | 550318 - 550965 | 24481.0 |
| hypothetical protein | DW150_02095 | Not Available | + | 551145 - 551393 | 9267.78 |
| hypothetical protein | DW150_02100 | Not Available | + | 551598 - 551816 | 7976.9 |
| thioredoxin | DW150_02105 | Not Available | + | 551819 - 552298 | 17688.5 |
| marr family transcriptional regulator | DW150_02110 | Not Available | + | 552336 - 552683 | 13203.1 |
| d-alanyl-d-alanine dipeptidase | DW150_02115 | Not Available | + | 552707 - 553372 | 25291.9 |
| sam-dependent methyltransferase | DW150_02120 | Not Available | + | 553376 - 554560 | 43813.0 |
| dna-binding response regulator | DW150_02125 | Not Available | - | 554557 - 555240 | 26125.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
