Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_21275 | Not Available | + | 5065337 - 5067259 | 73172.0 |
| sulfatase | DW150_21280 | Not Available | + | 5067354 - 5068775 | 52835.8 |
| arylsulfatase | DW150_21285 | Not Available | + | 5068885 - 5070411 | 57751.4 |
| abc transporter atp-binding protein | DW150_21290 | Not Available | + | 5070668 - 5072260 | 59432.8 |
| glycoside hydrolase family 3 protein | DW150_21295 | Not Available | - | 5072350 - 5074944 | 96044.1 |
| acetyl-coa hydrolase/transferase family protein | DW150_21300 | Not Available | - | 5075129 - 5076622 | 54000.7 |
| hypothetical protein | DW150_21305 | Not Available | - | 5076661 - 5077011 | 13213.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DW150_21310 | Not Available | + | 5077349 - 5078719 | 51864.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW150_21315 | Not Available | + | 5078719 - 5079120 | 15118.3 |
| pspc domain-containing protein | DW150_21320 | Not Available | - | 5079130 - 5079366 | 9155.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
