Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amidophosphoribosyltransferase | DW150_21170 | Not Available | + | 5041422 - 5042828 | 51992.8 |
| peptidase t | DW150_21175 | Not Available | + | 5042936 - 5044156 | 45285.3 |
| glycine cleavage system aminomethyltransferase gcvt | DW150_21180 | Not Available | + | 5044192 - 5045277 | 39725.7 |
| sodium:proton antiporter | DW150_21185 | Not Available | + | 5045483 - 5047750 | 84443.6 |
| hit family protein | DW150_21190 | Not Available | + | 5047775 - 5048200 | 16329.5 |
| rna-binding s4 domain-containing protein | DW150_21195 | Not Available | - | 5048298 - 5048726 | 16451.8 |
| aminoacyl-trna hydrolase | DW150_21200 | Not Available | - | 5048726 - 5049289 | 20618.0 |
| 50s ribosomal protein l25/general stress protein ctc | DW150_21205 | Not Available | - | 5049314 - 5049910 | 21442.4 |
| duf3276 family protein | DW150_21210 | Not Available | - | 5050091 - 5050474 | 14786.4 |
| transcription antitermination factor nusb | DW150_21215 | Not Available | + | 5050670 - 5051596 | 36291.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
