Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DW150_20875 | Not Available | - | 4978053 - 4979849 | 66367.5 |
| tetr/acrr family transcriptional regulator | DW150_20880 | Not Available | - | 4979989 - 4980600 | 24333.0 |
| tlpa family protein disulfide reductase | DW150_20885 | Not Available | - | 4980699 - 4981220 | 19860.8 |
| is66 family transposase | DW150_20890 | Not Available | - | 4981613 - 4983226 | 61826.7 |
| hypothetical protein | DW150_20895 | Not Available | - | 4983295 - 4983804 | 19813.7 |
| beta-glucosidase | DW150_20900 | Not Available | + | 4984217 - 4986445 | 81767.6 |
| hypothetical protein | DW150_20910 | Not Available | - | 4987310 - 4987558 | 9293.22 |
| transporter | DW150_20925 | Not Available | - | 4989072 - 4990031 | 35650.5 |
| n-acetylmuramoyl-l-alanine amidase | DW150_20930 | Not Available | + | 4990188 - 4991417 | 46099.4 |
| mce family protein | DW150_20935 | Not Available | + | 4991437 - 4992324 | 32637.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
