Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cpbp family intramembrane metalloprotease | DW150_02030 | Not Available | - | 540205 - 541035 | 30166.8 |
| hypothetical protein | DW150_02035 | Not Available | - | 541209 - 541502 | 10976.9 |
| duf3836 domain-containing protein | DW150_02040 | Not Available | - | 541502 - 541924 | 16085.9 |
| hypothetical protein | DW150_02045 | Not Available | + | 541945 - 542142 | 8115.02 |
| bifunctional riboflavin kinase/fad synthetase | DW150_02050 | Not Available | - | 542302 - 543222 | 35284.6 |
| had family phosphatase | DW150_02055 | Not Available | - | 543222 - 543836 | 24061.7 |
| calcium-translocating p-type atpase, pmca-type | DW150_02060 | Not Available | - | 543864 - 546494 | 97108.8 |
| Trna-met | Not Available | Not Available | + | 546650 - 546726 | Not Available |
| hypothetical protein | DW150_02070 | Not Available | - | 547072 - 547710 | 24226.5 |
| hypothetical protein | DW150_02075 | Not Available | - | 547707 - 548039 | 13445.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
