Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:rnase_p_rna | Not Available | Not Available | + | 44981 - 45350 | Not Available |
| s9 family peptidase | DW150_00170 | Not Available | - | 45318 - 47759 | 94292.0 |
| hypothetical protein | DW150_00175 | Not Available | - | 47869 - 48603 | 27061.5 |
| hybrid sensor histidine kinase/response regulator | DW150_00180 | Not Available | - | 48800 - 53200 | 168926.0 |
| pectin esterase | DW150_00185 | Not Available | - | 53396 - 55123 | 64143.9 |
| hypothetical protein | DW150_00190 | Not Available | - | 55130 - 56290 | 43314.3 |
| pectate lyase | DW150_00195 | Not Available | - | 56311 - 57924 | 61444.4 |
| cupin domain-containing protein | DW150_00200 | Not Available | + | 58113 - 58604 | 18210.0 |
| hypothetical protein | DW150_00205 | Not Available | - | 58695 - 60695 | 74660.9 |
| duf4968 domain-containing protein | DW150_00210 | Not Available | - | 60713 - 63097 | 91545.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
