Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5'/3'-nucleotidase sure | DW150_20440 | Not Available | + | 4888070 - 4888843 | 28361.7 |
| lipid-a-disaccharide synthase | DW150_20445 | Not Available | + | 4888840 - 4889979 | 43141.7 |
| hypothetical protein | DW150_20450 | Not Available | + | 4890036 - 4890770 | 27443.7 |
| phosphatidate cytidylyltransferase | DW150_20455 | Not Available | - | 4890762 - 4891601 | 30812.3 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | DW150_20460 | Not Available | - | 4891760 - 4893766 | 74660.1 |
| ribosome silencing factor | DW150_20465 | Not Available | - | 4893784 - 4894143 | 13411.9 |
| Trna-gln | Not Available | Not Available | + | 4894463 - 4894533 | Not Available |
| duf349 domain-containing protein | DW150_20475 | Not Available | - | 4894864 - 4896672 | 70110.9 |
| magnesium transporter | DW150_20480 | Not Available | - | 4896934 - 4898274 | 49694.8 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | DW150_20485 | Not Available | - | 4898306 - 4899148 | 31952.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
