Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1,4-alpha-glucan-branching enzyme | DW150_20340 | Not Available | - | 4865888 - 4867915 | 78088.1 |
| duf386 domain-containing protein | DW150_20345 | Not Available | - | 4867944 - 4868384 | 16248.5 |
| duf2461 domain-containing protein | DW150_20350 | Not Available | - | 4868421 - 4869086 | 25965.8 |
| inositol monophosphatase | DW150_20355 | Not Available | - | 4869162 - 4869950 | 29079.5 |
| phosphatidylinositol-4-phosphate 5-kinase | DW150_20360 | Not Available | - | 4869958 - 4871076 | 42482.8 |
| insulinase family protein | DW150_20365 | Not Available | - | 4871148 - 4872434 | 48598.5 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DW150_20370 | Not Available | - | 4872435 - 4873193 | 28081.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | DW150_20375 | Not Available | + | 4873272 - 4873646 | 14126.0 |
| tetr/acrr family transcriptional regulator | DW150_20380 | Not Available | + | 4874092 - 4874709 | 23929.2 |
| tolc family protein | DW150_20385 | Not Available | + | 4874706 - 4876004 | 49619.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
