Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DW150_01865 | Not Available | + | 503871 - 505202 | 50734.1 |
| Trna-pro | Not Available | Not Available | + | 505361 - 505435 | Not Available |
| hypothetical protein | DW150_01875 | Not Available | + | 505465 - 505581 | 4358.5 |
| alpha-1,2-fucosyltransferase | DW150_01880 | Not Available | - | 505632 - 506477 | 33678.6 |
| flavodoxin flda | DW150_01900 | Not Available | + | 509574 - 510077 | 17895.1 |
| duf2023 family protein | DW150_01905 | Not Available | + | 510094 - 510441 | 13491.7 |
| thioredoxin | DW150_01910 | Not Available | + | 510769 - 511065 | 11436.7 |
| aspartate--trna ligase | DW150_01915 | Not Available | + | 511200 - 512963 | 66573.0 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DW150_01920 | Not Available | + | 513138 - 513665 | 19685.0 |
| duf4251 domain-containing protein | DW150_01925 | Not Available | - | 513759 - 514349 | 21502.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
