Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW150_01810 | Not Available | + | 486748 - 487935 | 44204.9 |
| dmt family transporter | DW150_01815 | Not Available | + | 488023 - 488910 | 31789.8 |
| abc transporter permease | DW150_01820 | Not Available | - | 488918 - 491269 | 90162.2 |
| abc transporter atp-binding protein | DW150_01825 | Not Available | - | 491329 - 492003 | 24767.0 |
| abc transporter permease | DW150_01830 | Not Available | - | 492023 - 494386 | 90260.1 |
| abc transporter permease | DW150_01835 | Not Available | - | 494405 - 496804 | 91539.6 |
| abc transporter permease | DW150_01840 | Not Available | - | 496825 - 499194 | 90253.0 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW150_01845 | Not Available | - | 499205 - 500455 | 48125.4 |
| tolc family protein | DW150_01850 | Not Available | - | 500540 - 502009 | 55860.4 |
| sigma-54-dependent fis family transcriptional regulator | DW150_01860 | Not Available | + | 502507 - 503874 | 51849.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
