Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate reductase | DW150_01660 | Not Available | + | 453195 - 454148 | 35929.1 |
| heme-binding protein | DW150_01665 | Not Available | - | 454234 - 455430 | 45229.7 |
| tonb-dependent receptor | DW150_01670 | Not Available | - | 455464 - 457524 | 78257.3 |
| tonb-dependent receptor | DW150_01675 | Not Available | - | 457896 - 460073 | 81260.6 |
| putative transporter | DW150_01680 | Not Available | - | 460481 - 462169 | 60779.7 |
| cobyrinate a,c-diamide synthase | DW150_01685 | Not Available | + | 462403 - 463731 | 49083.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DW150_01690 | Not Available | + | 463728 - 464303 | 22159.8 |
| cobyric acid synthase | DW150_01695 | Not Available | + | 464303 - 465793 | 55430.8 |
| pyridoxal phosphate-dependent class ii aminotransferase | DW150_01700 | Not Available | + | 465786 - 466796 | 38773.7 |
| cobalamin biosynthesis protein cobd | DW150_01705 | Not Available | + | 466778 - 467710 | 34398.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
