Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uronate isomerase | DW150_01560 | Not Available | - | 426359 - 427765 | 54309.7 |
| tagaturonate reductase | DW150_01565 | Not Available | + | 428091 - 429530 | 53921.1 |
| hypothetical protein | DW150_01570 | Not Available | + | 429632 - 430045 | 15721.7 |
| precorrin-2 c(20)-methyltransferase | DW150_01575 | Not Available | - | 430008 - 430736 | 27445.1 |
| iron abc transporter substrate-binding protein | DW150_01580 | Not Available | + | 430840 - 431991 | 43261.9 |
| iron abc transporter permease | DW150_01585 | Not Available | + | 432003 - 433040 | 36729.8 |
| abc transporter atp-binding protein | DW150_01590 | Not Available | + | 433043 - 434062 | 37541.6 |
| cobalt-precorrin-5b (c(1))-methyltransferase | DW150_01595 | Not Available | - | 434081 - 435877 | 66013.2 |
| precorrin-4 c(11)-methyltransferase | DW150_01600 | Not Available | - | 435903 - 437714 | 67122.4 |
| precorrin-6y c5,15-methyltransferase (decarboxylating) subunit cbie | DW150_01605 | Not Available | - | 437736 - 438917 | 44364.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
