Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DW150_01400 | Not Available | - | 394044 - 394727 | 25699.9 |
| lysm peptidoglycan-binding domain-containing protein | DW150_01405 | Not Available | - | 394727 - 396535 | 68544.0 |
| excinuclease abc subunit uvra | DW150_01410 | Not Available | + | 396690 - 399518 | 105883.0 |
| cys-trna(pro) deacylase | DW150_01415 | Not Available | + | 399533 - 400018 | 17802.8 |
| mfs transporter | DW150_01420 | Not Available | + | 400125 - 401786 | 59855.1 |
| lysine exporter lyso family protein | DW150_01425 | Not Available | - | 401850 - 402470 | 22330.3 |
| duf340 domain-containing protein | DW150_01430 | Not Available | - | 402467 - 402745 | 10143.0 |
| duf4373 domain-containing protein | DW150_01435 | Not Available | + | 403365 - 404201 | 32184.3 |
| na+/h+ antiporter nhac family protein | DW150_01440 | Not Available | - | 404379 - 405683 | 46637.6 |
| altronate dehydratase | DW150_01445 | Not Available | - | 405829 - 407319 | 54186.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
