Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphohydrolase | DW150_01300 | Not Available | - | 373219 - 373920 | 27603.2 |
| lipoyl(octanoyl) transferase lipb | DW150_01305 | Not Available | + | 373986 - 375074 | 40834.6 |
| long-chain fatty acid--coa ligase | DW150_01310 | Not Available | - | 375162 - 376826 | 62479.0 |
| nad(p)/fad-dependent oxidoreductase | DW150_01315 | Not Available | - | 377141 - 378460 | 49839.2 |
| hypothetical protein | DW150_01320 | Not Available | - | 378528 - 379010 | 18641.2 |
| hypothetical protein | DW150_01325 | Not Available | + | 379259 - 379573 | 11472.3 |
| hypothetical protein | DW150_01330 | Not Available | + | 379743 - 379952 | 7934.52 |
| Trna-ala | Not Available | Not Available | + | 380728 - 380801 | Not Available |
| duf4286 family protein | DW150_01340 | Not Available | + | 380864 - 381169 | 11925.3 |
| crossover junction endodeoxyribonuclease ruvc | DW150_01345 | Not Available | + | 381166 - 381735 | 21073.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
