Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| noncanonical pyrimidine nucleotidase, yjjg family | DW150_00065 | Not Available | - | 22745 - 23434 | 26926.8 |
| hypothetical protein | DW150_00070 | Not Available | - | 23510 - 24358 | 31533.4 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DW150_00075 | Not Available | - | 24387 - 25061 | 24899.3 |
| thymidine kinase | DW150_00080 | Not Available | + | 25266 - 25865 | 22348.8 |
| ai-2e family transporter | DW150_00085 | Not Available | + | 25876 - 27012 | 42749.2 |
| Trna-lys | Not Available | Not Available | + | 27103 - 27178 | Not Available |
| hypothetical protein | DW150_00100 | Not Available | + | 27843 - 27926 | 2987.51 |
| cardiolipin synthase | DW150_00105 | Not Available | + | 28278 - 29573 | 49659.3 |
| methylenetetrahydrofolate reductase | DW150_00110 | Not Available | + | 29929 - 30882 | 36153.4 |
| dna polymerase iii subunit delta | DW150_00115 | Not Available | + | 30910 - 32034 | 43533.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
