Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DW150_00885 | Not Available | - | 275937 - 279233 | 122072.0 |
| duf4974 domain-containing protein | DW150_00890 | Not Available | - | 279390 - 280388 | 38176.8 |
| rna polymerase sigma-70 factor | DW150_00895 | Not Available | - | 280449 - 281039 | 23595.5 |
| hypothetical protein | DW150_00900 | Not Available | - | 281240 - 281473 | 8927.4 |
| alpha-galactosidase | DW150_00905 | Not Available | - | 281888 - 284044 | 82667.4 |
| arac family transcriptional regulator | DW150_00910 | Not Available | + | 284232 - 285128 | 34628.3 |
| 9-o-acetylesterase | DW150_00915 | Not Available | - | 285141 - 287093 | 72920.0 |
| glycosyl hydrolase | DW150_00920 | Not Available | - | 287211 - 289484 | 83932.4 |
| beta-mannosidase | DW150_00925 | Not Available | - | 289496 - 292438 | 111454.0 |
| galactose mutarotase | DW150_00930 | Not Available | - | 292468 - 293490 | 38668.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
