Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DW150_00780 | Not Available | - | 254926 - 255918 | 37964.6 |
| rna polymerase sigma-70 factor | DW150_00785 | Not Available | - | 255947 - 256522 | 22518.4 |
| glycoside hydrolase family 92 protein | DW150_00790 | Not Available | - | 256727 - 258949 | 83592.0 |
| hypothetical protein | DW150_00795 | Not Available | - | 259043 - 259738 | 26719.6 |
| hypothetical protein | DW150_00800 | Not Available | + | 259898 - 260584 | 25566.5 |
| helix-turn-helix domain-containing protein | DW150_00805 | Not Available | + | 260593 - 261408 | 31100.6 |
| general stress protein | DW150_00810 | Not Available | + | 261482 - 261889 | 15299.3 |
| atp-dependent clp protease adaptor clps | DW150_00815 | Not Available | + | 262118 - 262426 | 12034.5 |
| aaa family atpase | DW150_00820 | Not Available | + | 262444 - 264672 | 83015.6 |
| leucyl/phenylalanyl-trna--protein transferase | DW150_00825 | Not Available | + | 264768 - 265421 | 24969.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
