Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DW150_00725 | Not Available | + | 236357 - 237367 | 38678.1 |
| glycosyl hydrolase family 109 protein 2 | DW150_00730 | Not Available | - | 237490 - 238731 | 47371.7 |
| glycosidase | DW150_00735 | Not Available | - | 239253 - 240254 | 37626.8 |
| mfs transporter | DW150_00740 | Not Available | - | 240287 - 241585 | 47974.8 |
| glycoside hydrolase family 97 protein | DW150_00745 | Not Available | - | 241709 - 243724 | 75817.1 |
| endonuclease | DW150_00750 | Not Available | - | 243912 - 244757 | 31930.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW150_00755 | Not Available | - | 244801 - 246570 | 66872.8 |
| susc/raga family tonb-linked outer membrane protein | DW150_00760 | Not Available | - | 246594 - 249995 | 124973.0 |
| glycoside hydrolase family 92 protein | DW150_00770 | Not Available | - | 250284 - 252596 | 87838.7 |
| glycoside hydrolase family 92 protein | DW150_00775 | Not Available | - | 252626 - 254908 | 86453.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
