Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_00510 | Not Available | - | 178193 - 178888 | 26644.0 |
| glycoside hydrolase family 28 protein | DW150_00515 | Not Available | + | 180365 - 181858 | 55443.9 |
| beta-galactosidase | DW150_00520 | Not Available | + | 181956 - 184868 | 109846.0 |
| exopolygalacturonase | DW150_00525 | Not Available | + | 184910 - 186214 | 49176.8 |
| duf4858 domain-containing protein | DW150_00530 | Not Available | - | 186366 - 186929 | 21479.1 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DW150_00535 | Not Available | - | 187018 - 189483 | 92785.0 |
| gscfa domain protein | DW150_00540 | Not Available | - | 189459 - 190445 | 38613.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DW150_00545 | Not Available | + | 190538 - 192436 | 70238.9 |
| trk system potassium transporter trka | DW150_00550 | Not Available | + | 192449 - 193789 | 49264.4 |
| trkh family potassium uptake protein | DW150_00555 | Not Available | + | 193789 - 195243 | 53589.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
