Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf1573 domain-containing protein | DW150_00455 | Not Available | - | 162162 - 162446 | 10537.6 |
| helicase | DW150_00460 | Not Available | - | 162571 - 163968 | 53118.1 |
| dna-binding protein | DW150_00465 | Not Available | + | 164297 - 164977 | 25970.1 |
| rna polymerase sigma-70 factor | DW150_00470 | Not Available | - | 165170 - 165736 | 22233.9 |
| fecr family protein | DW150_00475 | Not Available | + | 165882 - 166895 | 38551.1 |
| susc/raga family tonb-linked outer membrane protein | DW150_00480 | Not Available | + | 167150 - 170515 | 124205.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00485 | Not Available | + | 170528 - 172153 | 61258.7 |
| arylsulfatase | DW150_00490 | Not Available | + | 172171 - 173586 | 53010.2 |
| glycosyl hydrolase family 43 | DW150_00495 | Not Available | + | 173983 - 175305 | 49801.6 |
| glycoside hydrolase family 43 protein | DW150_00500 | Not Available | + | 175420 - 177066 | 61687.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
