Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methionyl-trna formyltransferase | DW150_04920 | Not Available | - | 1212263 - 1213237 | 36638.5 |
| chloride channel protein | DW150_04925 | Not Available | - | 1213251 - 1215044 | 66651.6 |
| threonylcarbamoyl-amp synthase | DW150_04930 | Not Available | - | 1215062 - 1215637 | 21163.3 |
| glycoside hydrolase | DW150_04935 | Not Available | - | 1215872 - 1217539 | 62302.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_04940 | Not Available | - | 1217539 - 1219239 | 64714.8 |
| tonb-dependent receptor | DW150_04945 | Not Available | - | 1219270 - 1222233 | 109973.0 |
| glycoside hydrolase family 95 protein | DW150_04950 | Not Available | - | 1222288 - 1224672 | 90242.3 |
| hybrid sensor histidine kinase/response regulator | DW150_04955 | Not Available | - | 1224881 - 1229203 | 166117.0 |
| n-acetylglucosamine-6-phosphate deacetylase | DW150_04960 | Not Available | - | 1229337 - 1230500 | 42248.9 |
| acrb/acrd/acrf family protein | DW150_04965 | Not Available | - | 1230591 - 1233767 | 121038.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
