Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW150_04870 | Not Available | - | 1200819 - 1202312 | 54532.8 |
| glycoside hydrolase family 16 protein | DW150_04875 | Not Available | - | 1202640 - 1203431 | 30525.3 |
| phosphoglucosamine mutase | DW150_04880 | Not Available | - | 1203522 - 1204910 | 50505.7 |
| duf4827 domain-containing protein | DW150_04885 | Not Available | - | 1204907 - 1205542 | 24153.5 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DW150_04890 | Not Available | - | 1205625 - 1206665 | 39376.4 |
| comec family competence protein | DW150_04895 | Not Available | - | 1206715 - 1208634 | 72638.5 |
| ribulose-phosphate 3-epimerase | DW150_04900 | Not Available | - | 1208681 - 1209334 | 23913.3 |
| porin family protein | DW150_04905 | Not Available | - | 1209410 - 1210705 | 48112.6 |
| sigma-70 family rna polymerase sigma factor | DW150_04910 | Not Available | - | 1210708 - 1211250 | 20885.1 |
| hypothetical protein | DW150_04915 | Not Available | + | 1211408 - 1212190 | 29089.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
