Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyhydrolase | DW150_04820 | Not Available | - | 1182276 - 1184870 | 99335.6 |
| glycoside hydrolase | DW150_04825 | Not Available | - | 1184883 - 1186466 | 60352.6 |
| hypothetical protein | DW150_04830 | Not Available | + | 1186629 - 1186820 | 7019.79 |
| hybrid sensor histidine kinase/response regulator | DW150_04835 | Not Available | + | 1186842 - 1190894 | 154791.0 |
| hypothetical protein | DW150_04840 | Not Available | - | 1191331 - 1191516 | 7382.18 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_04845 | Not Available | - | 1191521 - 1193455 | 71515.0 |
| tonb-dependent receptor | DW150_04850 | Not Available | - | 1193469 - 1196540 | 113021.0 |
| glycoside hydrolase family 43 protein | DW150_04855 | Not Available | - | 1196582 - 1198318 | 64610.4 |
| alpha-n-arabinofuranosidase | DW150_04860 | Not Available | - | 1198668 - 1199639 | 36769.0 |
| 1,4-beta-xylanase | DW150_04865 | Not Available | - | 1199652 - 1200779 | 42233.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
