Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DW150_04770 | Not Available | - | 1166789 - 1168357 | 59720.5 |
| elongation factor g | DW150_04775 | Not Available | - | 1168620 - 1170779 | 80535.6 |
| coproporphyrinogen iii oxidase family protein | DW150_04780 | Not Available | + | 1170965 - 1172095 | 43475.8 |
| rna polymerase sigma-70 factor | DW150_04785 | Not Available | + | 1172511 - 1173137 | 24841.6 |
| hypothetical protein | DW150_04790 | Not Available | + | 1173193 - 1173600 | 15515.8 |
| duf4974 domain-containing protein | DW150_04795 | Not Available | + | 1173627 - 1174517 | 33784.5 |
| tonb-dependent receptor | DW150_04800 | Not Available | + | 1174524 - 1177199 | 102209.0 |
| duf4249 domain-containing protein | DW150_04805 | Not Available | + | 1177206 - 1178237 | 39194.1 |
| sialate o-acetylesterase | DW150_04810 | Not Available | - | 1178269 - 1180206 | 72720.1 |
| alpha-glucuronidase | DW150_04815 | Not Available | - | 1180234 - 1182279 | 77164.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
