Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | DW150_04715 | Not Available | - | 1158920 - 1159945 | 39424.7 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DW150_04720 | Not Available | - | 1159952 - 1161268 | 49289.0 |
| long-chain fatty acid--coa ligase | DW150_04725 | Not Available | + | 1161374 - 1163047 | 63307.5 |
| hypothetical protein | DW150_04730 | Not Available | + | 1163208 - 1163408 | 6663.71 |
| 50s ribosomal protein l9 | DW150_04740 | Not Available | - | 1163991 - 1164434 | 16159.9 |
| 30s ribosomal protein s18 | DW150_04745 | Not Available | - | 1164450 - 1164719 | 10561.2 |
| 30s ribosomal protein s6 | DW150_04750 | Not Available | - | 1164722 - 1165066 | 13428.3 |
| marr family transcriptional regulator | DW150_04755 | Not Available | + | 1165276 - 1165722 | 17228.0 |
| hypothetical protein | DW150_04760 | Not Available | + | 1165831 - 1166013 | 6168.02 |
| dna-binding response regulator | DW150_04765 | Not Available | - | 1166089 - 1166787 | 26811.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
