Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW150_04565 | Not Available | + | 1122394 - 1124097 | 63043.4 |
| rna polymerase sigma-70 factor | DW150_04570 | Not Available | + | 1124344 - 1124853 | 19967.9 |
| fecr family protein | DW150_04575 | Not Available | + | 1124923 - 1125726 | 30922.9 |
| tonb-dependent receptor | DW150_04580 | Not Available | + | 1125723 - 1128377 | 100776.0 |
| duf4249 domain-containing protein | DW150_04585 | Not Available | + | 1128384 - 1129349 | 36344.1 |
| 4-phosphoerythronate dehydrogenase pdxb | DW150_04590 | Not Available | - | 1129514 - 1130539 | 38299.9 |
| glycosyltransferase family 9 protein | DW150_04595 | Not Available | + | 1130644 - 1131675 | 38600.2 |
| acetyltransferase | DW150_04600 | Not Available | + | 1131676 - 1132599 | 37581.7 |
| udp-galactopyranose mutase | DW150_04605 | Not Available | + | 1132602 - 1133708 | 42898.6 |
| glycosyltransferase family 2 protein | DW150_04610 | Not Available | + | 1133792 - 1134508 | 27429.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
