Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DW150_04305 | Not Available | + | 1058513 - 1060441 | 72949.5 |
| tonb-dependent receptor | DW150_04310 | Not Available | + | 1060881 - 1064090 | 118912.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_04315 | Not Available | + | 1064110 - 1065861 | 66224.7 |
| hypothetical protein | DW150_04320 | Not Available | + | 1065886 - 1067664 | 64418.0 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW150_04325 | Not Available | + | 1067738 - 1069621 | 70115.9 |
| cysteine--trna ligase | DW150_04330 | Not Available | + | 1070011 - 1071492 | 56311.0 |
| aromatic amino acid lyase | DW150_04335 | Not Available | + | 1071682 - 1073253 | 58973.4 |
| 3-oxoacyl-acp reductase fabg | DW150_04340 | Not Available | + | 1073250 - 1073978 | 26409.7 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | DW150_04345 | Not Available | + | 1073986 - 1075215 | 44219.6 |
| acyl carrier protein | DW150_04350 | Not Available | + | 1075237 - 1075488 | 9584.45 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
