Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rhomboid family intramembrane serine protease | DW150_04255 | Not Available | - | 1040275 - 1041168 | 34002.7 |
| rhomboid family intramembrane serine protease | DW150_04260 | Not Available | - | 1041149 - 1041826 | 25349.5 |
| hu family dna-binding protein | DW150_04265 | Not Available | + | 1042037 - 1042309 | 9278.29 |
| duf4981 domain-containing protein | DW150_04270 | Not Available | + | 1042402 - 1045731 | 125844.0 |
| dna-binding protein | DW150_04275 | Not Available | + | 1045903 - 1046766 | 33124.8 |
| trna 2-thiouridine(34) synthase mnma | DW150_04280 | Not Available | + | 1046769 - 1047824 | 40099.7 |
| arylsulfatase | DW150_04285 | Not Available | + | 1047972 - 1049534 | 57652.3 |
| alpha-l-arabinofuranosidase | DW150_04290 | Not Available | - | 1050336 - 1052315 | 75354.2 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW150_04295 | Not Available | - | 1052339 - 1053874 | 57779.2 |
| response regulator | DW150_04300 | Not Available | + | 1054154 - 1058380 | 161266.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
