Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DW150_00370 | Not Available | - | 122545 - 125094 | 95925.9 |
| glycosyl hydrolase family 2 | DW150_00375 | Not Available | - | 125107 - 128433 | 123710.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00380 | Not Available | - | 128516 - 130114 | 61215.7 |
| tonb-dependent receptor | DW150_00385 | Not Available | - | 130135 - 133263 | 114668.0 |
| glycoside hydrolase family 2 | DW150_00390 | Not Available | - | 133875 - 136742 | 108283.0 |
| duf2264 domain-containing protein | DW150_00395 | Not Available | - | 137037 - 138266 | 46400.1 |
| glucuronyl hydrolase | DW150_00400 | Not Available | - | 138256 - 139446 | 45418.6 |
| 5s ribosomal rna | Not Available | Not Available | + | 141651 - 141761 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 141837 - 144732 | Not Available |
| duf4982 domain-containing protein | DW150_00405 | Not Available | - | 139502 - 142480 | 113242.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
